使用 TBB 插入到无序升压双映射中

Insert into an unordered boost bimap using TBB

提问人:AwaitedOne 提问时间:3/7/2018 最后编辑:1201ProgramAlarmAwaitedOne 更新时间:3/10/2018 访问量:117

问:

我对 .我正在尝试在无序的 bimap 中插入 pair,其中 is of type 和 is type .我尝试创建 ,它在文件中,看起来像TBB<key, value>keyuint64_tvaluestringloop objectTBB.h

void ParallelIndex(uint64_t &kmer_len, std::string &split_kmer, std::string &sequence_content,
            uint64_t &sequence_length, size_t &kmer_position ) {
        parallel_for( blocked_range<size_t>(0, sequence_length),
                [&](const blocked_range<size_t>& r) {
            for(i = r.begin(); i < r.end();  ++i ){
                split_kmer = sequence_content.substr(i, kmer_len);
                reference_index_vector.insert(position(kmer_position, split_kmer)); 
                i += kmer_len-1;
                kmer_position += kmer_len;

                }
        }
        );
    }

在函数中,我尝试调用该函数mainTBB.cpp

index.ParallelIndex(index.kmer_len, index.split_kmer, index.sequence_content,
        index.sequence_length, index.kmer_position );

它从 0 开始,一直到 n。我试图增加 5(首先和 ,就像直到 n),但只增加了 1。i++ii +=kmer_len-1i = 0, 5, 10, 15, ...i

完整代码如下所示:

TBB.cpp

#include <iostream>
#include <string>
#include <algorithm>
#include <boost/bimap.hpp>
#include <boost/bimap/unordered_set_of.hpp>
#include <boost/bimap/unordered_multiset_of.hpp>
#include "tbb/parallel_for.h"
#include "TBB.h"
#include "tbb/tbb.h"
#include <tbb/blocked_range.h>



using namespace tbb;


namespace bimaps = boost::bimaps;
typedef boost::bimap<bimaps::unordered_set_of<uint64_t>,
        bimaps::unordered_multiset_of<std::string> > bimap_reference;
typedef bimap_reference::value_type position;
bimap_reference reference_index_vector;



uint64_t thread_test::create_index::kmer_len = 5;
std::string thread_test::create_index::split_kmer = "";
std::string thread_test::create_index::sequence_content = "ABCDDBACDDDCBBAAACBDAADCBDAAADCBDADADACBDDCBBBCDCBCDAADCBBCDAAAD";
uint64_t thread_test::create_index::sequence_length = 0;
size_t thread_test::create_index::kmer_position = 0;
size_t thread_test::create_index::i = 0;
int main(){
    thread_test::create_index index;
    index.sequence_length = index.sequence_content.length();

    index.ParallelIndex(index.kmer_len, index.split_kmer, index.sequence_content,
            index.sequence_length, index.kmer_position );

    for( bimap_reference::const_iterator iter = reference_index_vector.begin(), iend = reference_index_vector.end();
                iter != iend; ++iter ) {
            std::cout << iter->left << " <--> "<< iter->right <<std::endl;
        }

}

待定

#ifndef TBB_H_
#define TBB_H_

#include<iostream>
#include <algorithm>
#include <utility>
#include <boost/bimap.hpp>
#include <boost/bimap/unordered_set_of.hpp>
#include <boost/bimap/unordered_multiset_of.hpp>
#include "tbb/tbb.h"
#include <tbb/parallel_for.h>
#include <tbb/blocked_range.h>
#include <tbb/mutex.h>


using namespace tbb;


namespace bimaps = boost::bimaps;

typedef boost::bimap<bimaps::unordered_set_of<uint64_t>,
        bimaps::unordered_multiset_of<std::string > > bimap_reference;
typedef bimap_reference::value_type position;
extern bimap_reference reference_index_vector;



namespace thread_test{

class create_index{

public:
    static uint64_t kmer_len;
    static std::string split_kmer;
    static std::string sequence_content;
    static uint64_t sequence_length;
    static size_t kmer_position;
    static size_t i;

//  using lambda function

    void ParallelIndex(uint64_t &kmer_len, std::string &split_kmer, std::string &sequence_content,
            uint64_t &sequence_length, size_t &kmer_position ) {
        parallel_for( blocked_range<size_t>(0, sequence_length),
                [&](const blocked_range<size_t>& r) {
            for(i = r.begin(); i < r.end();  ++i ){
                split_kmer = sequence_content.substr(i, kmer_len);
                reference_index_vector.insert(position(kmer_position, split_kmer));
                i += kmer_len-1;
                kmer_position += kmer_len;
                }
        }
        );
    }
};
}

#endif /* TBB_H_ */

问题增加了 1,但我尝试如上所述将其增加 5。i

C++ TBB 无序 boost-bimap

评论

3赞 Alexey Kukanov 3/8/2018
声明为 const;这是记录在案的要求。operator()tbb::parallel_for
0赞 AwaitedOne 3/8/2018
@AlexeyKukanov更改为后,我收到许多错误,例如 thread_test::create_index::sequence_content[abi:cxx11]''constTBB.cpp:(.text._ZNK11thread_test12create_indexclERKN3tbb13blocked_rangeImEE[_ZNK11thread_test12create_indexclERKN3tbb13blocked_rangeImEE]+0x35): undefined reference to
1赞 Agaz Wani 3/8/2018
@AwaitedOne 您以错误的方式定义变量。它需要高于 .对所有静态变量执行此操作,它应该编译。staticmain()uint64_t thread_test::create_index::kmer_len = 5;

答:

1赞 Agaz Wani 3/9/2018 #1

更改为 .在第一种情况下,您正在重新初始化 .for(i = r.begin(); i < r.end(); ++i )for(; i < r.end(); ++i )i = r.begin()